PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483969.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 228aa    MW: 26324.7 Da    PI: 9.0812
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17e-1667112247
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 
                      +e+k  r+vtfskR++ ++ KA E S+ ++a+v v++fs++gk  
  XP_016483969.1  67 YVESKEARYVTFSKRKASLFRKADEFSTVTGADVGVLLFSPSGKPC 112
                     5799***************************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.70358118IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-2258117IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-2259135IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-126080IPR002100Transcription factor, MADS-box
PfamPF003193.8E-1968114IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-128095IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-1295116IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMKPKQRWCS GGAGDGMVAT EDDRRSYGRQ PWMGCEESLE KKKQREGGAD VFFRRTSRGR  60
QKIEMKYVES KEARYVTFSK RKASLFRKAD EFSTVTGADV GVLLFSPSGK PCSYTSTSVE  120
KITEKFREWK QQNADEGKSS VFQAFDDLCK DIQDENEKAK SRELRYKVMY PGAEIPADKE  180
RLEKFMEMKL RLENINEATK NHIRAERLKF DLNVVPEYEV GESSGTHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483969.11e-171PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM0ZZJ75e-68M0ZZJ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000114271e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-19AGAMOUS-like 29